Mupirocin nasal ointment is a prescription antibiotic used inside the nostrils to clear Staphylococcus aureus bacteria, including methicillin-resistant Staphylococcus aureus (MRSA). It is applied with a cotton swab, a small amount placed inside each nostril, usually two to three times a day for a set number of days. The exact schedule comes from your prescriber, because the right duration depends on why you were given it.
Applying it correctly matters. The medicine has to reach the inside surface of the nostril, not the outer skin. Using too much, too little, or stopping early can all reduce how well it works.
What Is Mupirocin Nasal Ointment Used For?
Mupirocin is an antibiotic that stops certain bacteria from making proteins they need to survive. When applied inside the nose, it targets S. aureus, a bacterium that commonly lives in the nostrils without causing harm. Roughly a third of people carry S. aureus in their nose at any given time, and that carriage can raise the risk of infection elsewhere on the body or after surgery.
The nasal form of mupirocin is used for a few specific reasons:
- To clear nasal S. aureus carriage in people who carry it
- To reduce infection risk before certain surgical procedures
- To help control outbreaks of S. aureus or MRSA in healthcare or household settings
This is different from the skin ointment, which treats infections like impetigo. The nasal product is a distinct formulation and the two are not interchangeable. Do not put the skin ointment inside your nose unless a clinician specifically tells you to.
How To Apply Mupirocin Nasal Ointment: Steps And Tips
The application itself takes under a minute. What matters is getting the ointment onto the right surface and keeping the process clean.
Before You Start
- Wash your hands thoroughly with soap and water.
- Blow your nose gently to clear excess mucus. A clear passage helps the ointment reach the skin.
- Read the label for the amount and how often to apply. Do not guess.
Applying the Ointment
- Squeeze a small ribbon of ointment onto a clean cotton swab. A common instruction is about the size of a match head, but follow your prescriber’s specific direction.
- Insert the swab gently into one nostril, aiming toward the inner wall rather than straight up.
- Roll the swab around the inside of the nostril to coat the surface. You are covering the lining, not pushing deep into the nasal passage.
- Repeat with a fresh swab in the other nostril.
- Press the sides of your nose together lightly and rub for a few seconds. This spreads the ointment across the surface.
- Wash your hands again after you finish.
Tips That Help
- Use a fresh swab for each nostril to avoid moving bacteria from one side to the other.
- Apply at evenly spaced times through the day if your schedule allows.
- Keep the tube closed and store it as directed on the label.
- Do not share your tube with anyone else.
If you forget a dose, apply it when you remember unless it is almost time for the next one. Do not double up to make up for a missed dose.
How Much Should You Use and How Often?
The amount and frequency are set by your prescriber and depend on the reason for treatment. There is no single universal schedule.
A widely used regimen in clinical settings involves applying the ointment inside both nostrils two or three times a day, often for a defined short course such as five days. This is common practice, but it is not a rule that fits every situation. Some protocols use different durations, and some use it only in one nostril. The schedule you were given is the one that applies to you.
Do not extend the course on your own. Using an antibiotic longer than needed can encourage resistant bacteria to survive. If you feel the treatment is not working or you have questions about the schedule, contact your prescriber rather than adjusting it yourself.
What Are the Common Side Effects?
Most people tolerate nasal mupirocin without problems. When side effects do occur, they are usually mild and limited to where the ointment was applied.
- Burning, stinging, or itching inside the nose
- Dryness or irritation of the nasal lining
- Unpleasant taste
- Redness or mild swelling around the nostrils
These often settle as treatment continues. If irritation is severe, keeps getting worse, or you notice swelling of the face or difficulty breathing, stop using it and seek medical help. A serious allergic reaction is uncommon but possible.
Antibiotic resistance is a real concern with any antibiotic, including mupirocin. Using it exactly as prescribed — not more, not longer — is one of the few things you can do to help limit it.
Why Correct Technique Matters
The goal is to get the antibiotic in contact with the bacteria that live on the nasal lining. If the ointment sits mostly on the outer edge of the nostril or gets wiped away before it can work, the treatment is less likely to clear the bacteria.
Coating the inner surface with a thin layer, rather than a thick blob, is what the product is designed for. A thick layer does not work better and can be more irritating. It can also run down the back of the throat, which is unpleasant and wastes the medicine.
Consistency across the full course matters too. S. aureus can rebound if treatment stops early, and partial treatment may leave behind the bacteria that are hardest to kill.
When To Contact Your Doctor
Reach out to your prescriber if:
- Your symptoms get worse instead of better
- You develop a new infection or fever
- You have a severe reaction such as widespread rash, swelling, or trouble breathing
- You are unsure whether the treatment is working
Testing to confirm the bacteria are gone is sometimes done, especially before surgery or in outbreak settings. Whether that applies to you depends on your situation, so ask your care team if you are unsure.
What Mupirocin Nasal Ointment Does Not Do
It does not treat viral infections like the common cold or flu. It does not clear S. aureus from other parts of the body on its own — the nose is just one common site, and the bacteria can also live on the skin, in the throat, or elsewhere.
It is also not a substitute for basic hygiene. Handwashing and cleaning shared items still matter, particularly in households where S. aureus or MRSA is being managed.
Decolonization — the process of clearing the bacteria from the body — often involves more than nasal ointment alone. Some protocols add antibacterial body washes or other steps. Your care team will tell you if more is needed in your case.
Frequently Asked Questions
How do you apply mupirocin nasal ointment correctly?
Wash your hands, blow your nose gently, then place a small amount of ointment on a clean cotton swab and roll it around the inside of one nostril. Use a fresh swab for the other nostril, press your nose together to spread it, and wash your hands again.
How many times a day should you use mupirocin nasal ointment?
Your prescriber sets the schedule, and a common regimen is two to three times a day for a short, defined course. Follow the specific instructions you were given rather than a general rule.
Can you use mupirocin nasal ointment for a sinus infection?
No, nasal mupirocin is intended to clear S. aureus bacteria from the nostrils, not to treat sinus infections. Sinus infections usually need a different approach, so talk to a clinician about your symptoms.
What happens if you swallow mupirocin nasal ointment?
Small amounts that drip down the throat are generally not a concern, but swallowing a large amount is not intended and you should contact a poison control center or your doctor. Keep the tube away from children.

